PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF073300120CFD_t1
Common NameTRAES_3BF073300120CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 297aa    MW: 31186.6 Da    PI: 5.2117
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF073300120CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-3074132259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp++v itY+ eHnh+
  TRAES3BF073300120CFD_t1  74 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSQADPDTVLITYSYEHNHS 132
                              69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.17168134IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-3070132IPR003657WRKY domain
SuperFamilySSF1182902.22E-2571132IPR003657WRKY domain
SMARTSM007741.5E-3673133IPR003657WRKY domain
PfamPF031062.9E-2575131IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDGEWSDGAV SGGEQKASGD GVSADCNSPG SPSPPAVPST SGRRRSLQKR VVTVPLADLN  60
VPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS SSKGCPARKQ VERSQADPDT  120
VLITYSYEHN HSSTVARAQS RPTPTPKPNK ERPLPSPEPA KSDGTHHGTA NVAGGLVTAS  180
PAPAIEVHDD FRWLYDVVSV TSSTSPSEVE AADDMLLYGP MFFGKPVVEV DTAALLPGEF  240
GGEAVGGEGG EEDDAMFAGL GELPECAIVF RRHARDGLAA MAGGVKVEQP AEGTAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-17741311571WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568230.0AK356823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1040G05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232262.11e-123PREDICTED: probable WRKY transcription factor 65
TrEMBLW5CSQ70.0W5CSQ7_WHEAT; Uncharacterized protein
STRINGMLOC_14821.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-42WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]